Breckels LM, Gatto L, Lilley KS. Learning from heterogenous data sources: An application in spatial proteomics. PLoS Computational Biology. 2016;Accepted

Das S, Lee D, Sillitoe I, Dawson NL, Lees JG, Orengo CA. Functional classification of CATH superfamilies: a domain-based approach for protein function annotation. Bioinformatics. 2015;31(21):3460-7.

Das S, Sillitoe I, Lee D, Lees JG, Dawson NL, Ward J, Orengo CA. CATH FunFHMMer web server: protein functional annotations using functional family assignments. Nucleic Acids Res. 2015;43(W1):W148-53.

Fabre B, Korona D, Groen A, Vowinckel J, Gatto L, Deery MJ, Ralser M, Russell S, Lilley KS. Analysis of the Drosophila melanogaster proteome dynamics during the embryo early development by a combination of label-free proteomics approaches. Proteomics. 2016

Gatto L, Breckels LM, Naake T, Gibb S. Visualization of proteomics data using R and bioconductor. Proteomics. 2015;15(8):1375-89.

Gatto L, Hansen KD, Hoopmann MR, Hermjakob H, Kohlbacher O, Beyer A. Testing and Validation of Computational Methods for Mass Spectrometry. J Proteome Res. 2016;15(3):809-14.

Gutzwiller F, Carmo CR, Miller DE, Rice DW, Newton IL, Hawley RS, Teixeira L, Bergman CM. Dynamics of Wolbachia pipientis Gene Expression Across the Drosophila melanogaster Life Cycle. G3 (Bethesda). 2015;5(12):2843-56.

Lam SD, Dawson NL, Das S, Sillitoe I, Ashford P, Lee D, Lehtinen S, Orengo CA, Lees JG. Gene3D: expanding the utility of domain assignments. Nucleic Acids Res. 2016;44(D1):D404-9.

Lazar C, Gatto L, Ferro M, Bruley C, Burger T. Accounting for the Multiple Natures of Missing Values in Label-Free Quantitative Proteomics Data Sets to Compare Imputation Strategies. J Proteome Res. 2016;15(4):1116-25.

Lees JG, Heriche JK, Morilla I, Fernandez JM, Adler P, Krallinger M, Vilo J, Valencia A, Ellenberg J, Ranea JA, Orengo C. FUN-L: gene prioritization for RNAi screens. Bioinformatics. 2015;31(12):2052-3.

Lees JG, Orengo CA. Diversity of Domains and Protein Families. Current Opinion in Structural Biology. 2016;Accepted

Lees JG, Ranea JA, Orengo CA. Identifying and characterising key alternative splicing events in Drosophila development. BMC Genomics. 2015;16:608.

Lehtinen S, Lees J, Bahler J, Shawe-Taylor J, Orengo C. Gene Function Prediction from Functional Association Networks Using Kernel Partial Least Squares Regression. PLoS One. 2015;10(8):e0134668.

Related Publications

Christoforou A, Mulvey CM, Breckels LM, Geladaki A, Hurrell T, Hayward PC, Naake T, Gatto L, Viner R, Arias AM, Lilley KS. A draft map of the mouse pluripotent stem cell spatial proteome. Nat Commun. 2016;7:9992